|
+ |
|
→ |
|
+ | UDP |
* ~30 % of all O-linked glycans in the brain are O-mannose based. This is initiated by protein O-mannosyltransferase 1 (POMT1) and POMT 2, followed by POMGnT1 activity.
* A brain-specific β1,6-N-GlcNAcT (MGAT5B) has been cloned that transfers β1,6GlcNAc to a-mannose in GlcNAc-β1,2-Man-a sequence on both N-glycans and O-mannosyl glycans. In vivo this enzyme is dominantly considered to act on o-mannose glycans of the brain.
* Due to its activity, a variety of extended structures can be formed on the O-mannose backbone including sialylated glycans, glycans with HNK-1 epitope, and those with Lewis X structures.
ER | Cis- | Medial- | Trans- | TGN |
---|---|---|---|---|
MGAT5B/hsa-miR-4749-3p |
---|
miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'...GGGAUGUGGACA
GAGGGGCA
... 3' GACACCCCCGUC CUCCCCG C |
8mer | 576-583 | -0.333 | 95.0 | -0.333 | 96.0 | noncon | |
5'...UGAGAGUUGGUG
GAGGGGC
C... 3' GACACCCCCGUC CUCCCCG C |
7mer-m8 | 1343-1349 | -0.129 | 73.0 | -0.129 | 81.0 | noncon | |
5'...GAAGGGUCCAAG
GAGGGGC
C... 3' GACACCCCCGUC CUCCCCG C |
7mer-m8 | 444-450 | -0.092 | 66.0 | -0.092 | 76.0 | noncon | |
5'...CUACCCCCUCCA
AGGGGCA
G... 3' GACACCCCCGUCC UCCCCG C |
7mer-A1 | 851-857 | -0.036 | 48.0 | -0.036 | 60.0 | noncon |