|
+ |
|
→ |
|
+ | UDP |
* ~30 % of all O-linked glycans in the brain are O-mannose based. This is initiated by protein O-mannosyltransferase 1 (POMT1) and POMT 2, followed by POMGnT1 activity.
* A brain-specific β1,6-N-GlcNAcT (MGAT5B) has been cloned that transfers β1,6GlcNAc to a-mannose in GlcNAc-β1,2-Man-a sequence on both N-glycans and O-mannosyl glycans. In vivo this enzyme is dominantly considered to act on o-mannose glycans of the brain.
* Due to its activity, a variety of extended structures can be formed on the O-mannose backbone including sialylated glycans, glycans with HNK-1 epitope, and those with Lewis X structures.
ER | Cis- | Medial- | Trans- | TGN |
---|---|---|---|---|
MGAT5B/hsa-miR-6885-5p |
---|
miRNA Target | Site Type | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
---|---|---|---|---|---|---|---|---|
5'... ACUUACCCUAGGUA
GCCCCCCA
... 3' CCGAAACGAACGCGUCA CGGGGGG A |
8mer | 1052-1059 | -0.409 | 91.0 | -0.409 | 93.0 | noncon | |
5'... GUCCUCCUCGCAAC
CCCCCCA
G... 3' CCGAAACGAACGCGUCAC GGGGGG A |
7mer-A1 | 103-109 | -0.158 | 58.0 | -0.158 | 69.0 | noncon | |
5'... GCCCCCUUUCCCUC
CCCCCCA
U... 3' CCGAAACGAACGCGUCAC GGGGGG A |
7mer-A1 | 1177-1183 | -0.142 | 55.0 | -0.142 | 67.0 | noncon |