GlycoEnzDB
The Comprehensive Glyco-enzyme Database
GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
SLC35B4


 General Info

 About

 Related Pathway

 Related Database

 Enzyme Specificity

 Simulation Para.

 Expression Data

 Cancer Cell Line

 Transcription factor

 miRNA-GlycoEnzyme


General Information
Gene Symbol:   
SLC35B4
Protein name:   
UDP-xylose and UDP-N-acetylglucosamine transporter
Enzyme Class:   
CAZy Family:   
E.C. No:   
Reaction (SNFG):   

UDP-Xyl [Cyto] or UDP-GlcNAc [Cyto] → UDP-Xyl [Golgi] or UDP-GlcNAc [Golgi]
Reaction (IUBMB):   
No specified reaction.
About

* UDP-xylose is made within the lumen of the ER or Golgi by UDP-xylose synthase (UXS)
* There is a transporter for this nucleotide-sugar, that transports both UDP-Xyl and UDP-GlcNAc

Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
No Record 
Reactome:   
R-HSA-727802
Related Database
Organism:   
Homo sapiens
Uniprot:   
Q969S0 
NCBI GeneID:   
84912
GlyMap GeneID:   
84912
DNA_RefSeq:   
NM_032826.4 
Protein_RefSeq:   
NP_116215.1 
BRENDA:   
Kinetic info.
OMIM number:   
610923
GeneCards database:   
SLC35B4
Enzyme Specificity
Glycan Type:  
     
Compartment:  
     Cis, Medial, Trans, TGN
Substrate:  
     UDP-Xyl [Cyto] or UDP-GlcNAc [Cyto](-CHAR)
Product:  
     UDP-Xyl [Golgi] or UDP-GlcNAc [Golgi](-CHAR)
Simulation Parameters
Mechaelis-Menten parameters (suggested)
Vm:       (pmol/cell • hr)       Km:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN










Expression Data {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 8 6 4 2 0 RPKM
Expression data are collected from NCBI gene database
Cancer Cell Line Encyclopedia {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 60 50 40 30 20 10 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data
miRNA-GlycoEnzyme Interactome {ref. 9}
SLC35B4/hsa-miR-6502-5p
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'...UCCAAAACUCUAUG CUAGAGCA ...
3'   CCAGUUGUUAGAAA GAUCUCG A
 8mer 2813-2820 -0.292 94.0 -0.278 95.0 noncon
5'...UUCGCGUCUGGUCU UAGAGCA U...
3'   CCAGUUGUUAGAAAG AUCUCG A
 7mer-A1 2346-2352 -0.133 69.0 -0.127 79.0 noncon
5'...ACAUUGACAGCUUU CUAGAGC C...
3'   CCAGUUGUUAGAAA GAUCUCG A
 7mer-m8 1977-1983 -0.131 68.0 -0.125 79.0 noncon