GlycoEnzDB
The Comprehensive Glyco-enzyme Database
GlycoEnzDB
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SLC35C1


 General Info

 About

 Related Pathway

 Related Database

 Enzyme Specificity

 Simulation Para.

 Expression Data

 Cancer Cell Line

 Transcription factor

 miRNA-GlycoEnzyme


General Information
Gene Symbol:   
SLC35C1
Protein name:   
GDP-fucose transporter 1
Enzyme Class:   
CAZy Family:   
E.C. No:   
Reaction (SNFG):   

GPF-Fuc [cyto] → GPF-Fuc [Golgi]
Reaction (IUBMB):   
No specified reaction.
About

* Transports only GDP-Fuc (synthesized in cytoplasm) to the Golgi lumen
* Golgi fucosylation was strongly impaired in SLC35C1-deficient patients and knockout mouse, fucosylation in the ER was not extensively affected. Thus, there may be other fucose transporters in ER

Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
No Record 
Reactome:   
R-HSA-5619078
Related Database
Organism:   
Homo sapiens
Uniprot:   
Q96A29 
NCBI GeneID:   
55343
GlyMap GeneID:   
55343
DNA_RefSeq:   
NM_001145265.1 
Protein_RefSeq:   
NP_001138737.1 
BRENDA:   
Kinetic info.
OMIM number:   
605881
GeneCards database:   
SLC35C1
Enzyme Specificity
Glycan Type:  
     
Compartment:  
     Cis, Medial, Trans, TGN
Substrate:  
     GPF-Fuc [cyto](-CHAR)
Product:  
     GPF-Fuc [Golgi](-CHAR)
Simulation Parameters
Mechaelis-Menten parameters (suggested)
Vm:       (pmol/cell • hr)       Km:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN










Expression Data {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 20 10 0 RPKM
Expression data are collected from NCBI gene database
Cancer Cell Line Encyclopedia {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 40 30 20 10 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data
miRNA-GlycoEnzyme Interactome {ref. 9}
SLC35C1/hsa-miR-3199
miRNA Target Site Type Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
5'... UUAACAUCCUCCCC CAGUCCC U...
3'   UUGAAAGAGGAUUCC GUCAGGG A
 7mer-m8 717-723 -0.251 91.0 -0.201 89.0 noncon
5'... CCCCCCUCCCUCUC CAGUCCC C...
3'   UUGAAAGAGGAUUCC GUCAGGG A
 7mer-m8 1592-1598 -0.207 85.0 -0.166 85.0 noncon
5'... CUCAGGGUGGCUUG CAGUCCC U...
3'   UUGAAAGAGGAUUCC GUCAGGG A
 7mer-m8 1474-1480 -0.118 66.0 -0.095 73.0 noncon