EnzFunc

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 

Pathway Map

POFUT1



General Information
Gene Symbol:   
POFUT1
Protein name:   
GDP-fucose protein O-fucosyltransferase 1
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
E.C. No:   
Organs:   
Reaction (SNFG):   
+ Ser|Thr
+ GDP
Reaction (IUBMB):   
No specified reaction.

About

• ER resident protein-O-fucosyltransferases [POFUT1/FUT12 and POFUT2/FUT13] that attach alpha-Fuc to hydroxyl of Ser/Thr at specific consensus sequences of epidermal growth factor (EGF)-like repeats (added by POFUT1) and thrombospondin type 1 repeat (TSR, added by POFUT2).
• Putative consensus sequences for O-fucosylation in EGF repeats [C2-X-X-X-X-(S/T)-C3] and TSRs [C2-X-X-(S/T)-C3-X-X-G] have been defined, where Cx refers to the position of one of the conserved cysteines within the domain and S/T is the site of modification.
• Thus, these enzymes may fucosylate ~100 EGF repeat structures (by POFUT1) and ~30 TSRs (by POFUT2). EGF repeats of proteins bearing O-Fuc include tissue-type plasminogen activator, Factor VII, Factor IX, Notch, Delta, Serrate, Jagged, and Cripto. Examples of TSR1 modified proteins include members of the disintegrin and metalloprotease domain with thrombospondin type 1 repeats family (e.g., ADAMTS 5 and 13) and ADAMTS-like family (e.g., ADAMTSL1; Wang et al. 2007).
• Mice lacking POFUT1 are embryonically lethal, and those without POFUT2 die at E7.5. Thus, both POFUT1 and POFUT2 play essential roles in development.
• POFUT1 plays a key role in regulating Notch dependent signaling.
• The O-fucose on Notch EGF repeats are extended by the Fringe family of β3-GlcNAcTs. They can be further extended to create Siaα2-3/6Galβ1-4GlcNAcβ1-3Fucα-O-Ser/Thr.
• O-Fucose on TSRs is typically found extended to the disaccharide Glcβ1-3Fucα-O-Ser/Thr This extension elongation is due to a β3-glucosyltransferase. Mutations in the β3-glucosyltransferase result in the human developmental disorder Peters plus syndrome. Both O-fucosylated and C-mannosylation occur on TSR1/thrombospondin-1.


Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
Reactome:   

Related Database
Organism:   
Homo sapiens
Uniprot:   
NCBI GeneID:   
GlyMap GeneID:   
DNA aRefSeq:   
Protein RefSeq:   
BRENDA:   
OMIM number:   
GeneCards database:   

Enzyme Specificity
Glycan Type:  
     O-linked (other)
Compartment:  
     ER
Substrate:  
     Ser|Thr
Product:  
     Fuc(a1-?)Ser|Thr

Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:       (pmol/cell • hr)       KM:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN











Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 20 10 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 100 80 60 40 20 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
No high degree of confidence data

miRNA-GlycoEnzyme Interactome {ref. 9}
miRNA Name Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
hsa-miR-1247-5p 3849-3856 -0.732 99.0 -0.071 66.0 noncon
hsa-miR-6795-5p 1688-1695 -0.464 95.0 -0.355 92.0 noncon
hsa-miR-6887-5p 1688-1695 -0.456 94.0 -0.349 91.0 noncon
hsa-miR-4433a-5p 2667-2674 -0.425 98.0 -0.2 93.0 noncon
hsa-miR-423-3p 2902-2909 -0.413 95.0 -0.187 79.0 noncon
hsa-miR-4314 3887-3894 -0.398 98.0 -0.042 57.0 noncon
hsa-miR-6070 2899-2906 -0.397 90.0 -0.18 73.0 noncon
hsa-miR-4655-3p 912-919 -0.397 96.0 -0.306 94.0 noncon
hsa-miR-6874-5p 1824-1831 -0.385 97.0 -0.296 96.0 noncon
hsa-miR-7150 113-120 -0.38 98.0 -0.38 98.0 noncon
hsa-miR-7109-5p 1689-1696 -0.378 96.0 -0.291 94.0 noncon
hsa-miR-6809-5p 1172-1179 -0.371 97.0 -0.286 96.0 noncon
hsa-miR-4749-3p 3012-3019 -0.364 96.0 -0.166 86.0 noncon
hsa-miR-299-3p 3998-4004 -0.361 98.0 -0.002 32.0 noncon
hsa-miR-1266-5p 2222-2229 -0.352 98.0 -0.168 92.0 noncon
hsa-miR-1288-3p 262-269 -0.339 96.0 -0.339 97.0 noncon
hsa-miR-6759-5p 3997-4003 -0.336 97.0 -0.002 27.0 noncon
hsa-miR-550b-2-5p 2051-2058 -0.325 97.0 -0.185 92.0 noncon
hsa-miR-1234-3p 898-904 -0.324 96.0 -0.251 94.0 noncon
hsa-miR-1260b 3216-3223 -0.314 95.0 -0.145 85.0 noncon
hsa-miR-1260a 3216-3223 -0.314 95.0 -0.145 85.0 noncon
hsa-miR-7107-5p 898-904 -0.313 95.0 -0.243 93.0 noncon
hsa-miR-6887-3p 2447-2454 -0.31 92.0 -0.149 79.0 noncon
hsa-miR-4736 112-119 -0.31 98.0 -0.31 98.0 noncon
hsa-miR-6078 3128-3134 -0.306 95.0 -0.141 89.0 noncon
hsa-miR-3202 1007-1014 -0.302 96.0 -0.235 94.0 noncon
hsa-miR-6862-5p 1817-1824 -0.293 90.0 -0.227 88.0 noncon
hsa-miR-4761-5p 1834-1841 -0.293 97.0 -0.227 96.0 noncon
hsa-miR-4646-5p 3886-3893 -0.29 98.0 -0.032 67.0 noncon
hsa-miR-4253 1817-1824 -0.29 90.0 -0.225 88.0 noncon
hsa-miR-3914 190-197 -0.289 96.0 -0.289 97.0 noncon
hsa-miR-4763-3p 1555-1562 -0.288 95.0 -0.223 92.0 noncon
hsa-miR-4518 2222-2229 -0.287 98.0 -0.138 94.0 noncon
hsa-miR-4800-5p 283-289 -0.285 92.0 -0.285 95.0 noncon
hsa-miR-6738-5p 142-149 -0.283 95.0 -0.283 96.0 noncon
hsa-miR-4665-5p 502-509 -0.281 92.0 -0.239 90.0 noncon
hsa-miR-6865-5p 2390-2396 -0.28 95.0 -0.135 89.0 noncon
hsa-miR-6815-5p 2390-2396 -0.28 95.0 -0.135 89.0 noncon
hsa-miR-1237-5p 3760-3766 -0.279 91.0 -0.076 60.0 noncon
hsa-miR-1207-5p 1555-1562 -0.278 94.0 -0.216 91.0 noncon
hsa-miR-6734-5p 143-150 -0.277 91.0 -0.277 94.0 noncon
hsa-miR-6866-5p 2323-2330 -0.277 92.0 -0.134 85.0 noncon
hsa-miR-7851-3p 2747-2754 -0.276 93.0 -0.128 83.0 noncon
hsa-miR-644a 721-727 -0.275 93.0 -0.214 92.0 noncon
hsa-miR-1224-3p 3215-3222 -0.275 96.0 -0.128 89.0 noncon
hsa-miR-6817-3p 323-330 -0.274 97.0 -0.274 98.0 noncon
hsa-miR-7110-3p 3075-3082 -0.274 91.0 -0.127 83.0 noncon
hsa-miR-7106-3p 2710-2716 -0.273 93.0 -0.127 80.0 noncon
hsa-miR-3663-3p 1046-1052 -0.273 91.0 -0.213 91.0 noncon
hsa-miR-210-5p 1298-1305 -0.272 93.0 -0.211 91.0 noncon
hsa-miR-103a-3p 1078-1085 -0.268 95.0 -0.208 94.0 noncon
hsa-miR-107 1078-1085 -0.268 95.0 -0.208 94.0 noncon
hsa-miR-6847-5p 1935-1942 -0.264 97.0 -0.205 95.0 noncon
hsa-miR-4529-5p 763-770 -0.263 90.0 -0.205 90.0 noncon
hsa-miR-6767-3p 2815-2821 -0.261 92.0 -0.122 84.0 noncon
hsa-miR-4798-3p 3962-3968 -0.26 97.0 -0.029 54.0 noncon
hsa-miR-7106-3p 2787-2794 -0.254 92.0 -0.119 79.0 noncon
hsa-miR-6752-3p 2894-2901 -0.253 91.0 -0.118 81.0 noncon
hsa-miR-4660 1527-1534 -0.252 93.0 -0.196 92.0 noncon
hsa-miR-1193 437-443 -0.25 94.0 -0.214 95.0 con
hsa-miR-4452 3938-3945 -0.25 98.0 -0.028 81.0 noncon