EnzFunc

GlycoEnzDB
Comprehensive glycoEnzyme database and dynamic pathway generation

Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).

GlycoEnzDB
Create glycosylation pathway
Custom database generation
Instructions/Reference
 
Pathway Map
UGT1A9



General Information
Gene Symbol:   
UGT1A9
Protein name:   
UDP-glucuronosyltransferase 1A9
Enzyme Class:   
Glycosyltransferase
CAZy Family:   
GT1
E.C. No:   
2.4.1.17
Tissues:   
Muscular, Epithelial, Connective, Nervous
Organs:   
Reaction (SNFG):   
+ R →
+ UDP
Reaction (IUBMB):   
No specified reaction.
About

• UGTs are glucuronyltransferases involved in the glucuronidation pathway. This involves the addition of glucuronic acid to excretables such as bilirubin, xenobiotics, and drugs. Substrates tend to be lipophilic in nature.
• Glucuronidation is often involved in drug metabolism of substances such as drugs, pollutants, bilirubin, androgens, estrogens, mineralocorticoids, glucocorticoids, fatty acid derivatives, retinoids, and bile acids.

Related Pathway
KEGG ORTHOLOGY:   
KEGG Pathway:   
No Record 
Reactome:   
R-HSA-156588
Related Database
Organism:   
Homo sapiens
Uniprot:   
O60656 
NCBI GeneID:   
54600
GlyMap GeneID:   
54600
DNA aRefSeq:   
NM_021027.2 
Protein RefSeq:   
NP_066307.1 
BRENDA:   
Kinetic info.
OMIM number:   
191740
GeneCards database:   
UGT1A9
Enzyme Specificity
Glycan Type:  
     
Compartment:  
     
Substrate:  
     R
Product:  
     GlcA(??-?)R
Simulation Parameters
Mechaelis-Menten parameters (suggested)
VM:       (pmol/cell • hr)       KM:       (pM)
Relative conc of enzymes in compartment.(sum will be normalized to 1)
ER Cis- Medial- Trans- TGN










Expression Data in Tissue {ref. 5} Source from NCBI gene database
adrenal appendix bone marrow brain colon duodenum endometrium esophagus fat gall bladder heart kidney liver lung lymph node ovary pancreas placenta prostate salivary gland skin small intestine spleen stomach testis thyroid urinary bladder 240 220 200 180 160 140 120 100 80 60 40 20 0 RPKM
Expression Data in Cells {ref. 13} Source from Cancer Cell Line Encyclopedia database
Kidney Lung Breast Prostate Large intestine Ovary HL60 haematopoietic and lymphoid tissue Skin Central nervous system 786O A498 ACHN CAKI1 UO31 A549 EKVX HOP62 HOP92 NCIH226 NCIH23 NCIH322 NCIH460 NCIH522 SHP77 BT549 HS578T MCF7 MDAMB231 MDAMB468 T47D DU145 PC3 HCT116 HCT15 HT29 KM12 SW620 OVCAR4 OVCAR8 IGROV1 SKOV3 HL60 K562 RPMI8226 LOXIMVI MALME3M RPMI7951 SKMEL28 SKMEL5 UACC257 UACC62 SF268 SF295 SF539 SNB75 4 2 0 Transcripts per million (TPM)
Transcription factor {ref. 10}
Transcriptional start site (TSS) 0 200 -2000 -1800 -1600 -1400 -1200 -1000 -800 -600 -400 -200
ENST00000354728 TAF1 RXRA ZBTB33
miRNA-GlycoEnzyme Interactome {ref. 9}
miRNA Name Pos. Context Score Frac. Wt. Context Frac. Conserved Quality
hsa-miR-185-3p 121-128 -0.586 99.0 -0.586 99.0 noncon
hsa-miR-8065 699-706 -0.53 99.0 -0.53 99.0 noncon
hsa-miR-6736-3p 629-636 -0.52 99.0 -0.52 99.0 noncon
hsa-miR-6839-3p 646-653 -0.47 98.0 -0.47 99.0 noncon
hsa-miR-491-3p 108-115 -0.454 98.0 -0.454 99.0 noncon
hsa-miR-3194-5p 263-270 -0.428 98.0 -0.428 99.0 noncon
hsa-miR-200a-3p 69-76 -0.426 99.0 -0.426 99.0 con
hsa-miR-141-3p 69-76 -0.426 99.0 -0.426 99.0 con
hsa-miR-3121-3p 738-745 -0.391 99.0 -0.001 39.0 noncon
hsa-miR-5088-3p 471-478 -0.356 98.0 -0.356 98.0 noncon
hsa-miR-5093 45-52 -0.356 99.0 -0.356 99.0 noncon
hsa-miR-6835-3p 131-138 -0.351 99.0 -0.351 99.0 noncon
hsa-miR-6743-5p 342-349 -0.336 97.0 -0.336 98.0 noncon
hsa-miR-4688 342-349 -0.334 96.0 -0.334 97.0 noncon
hsa-miR-218-2-3p 30-36 -0.318 97.0 -0.318 98.0 noncon
hsa-miR-3158-5p 384-391 -0.317 98.0 -0.317 98.0 noncon
hsa-miR-3123 143-149 -0.316 99.0 -0.316 99.0 noncon
hsa-miR-4793-5p 224-231 -0.314 98.0 -0.314 98.0 noncon
hsa-miR-4496 697-704 -0.311 99.0 -0.311 99.0 noncon
hsa-miR-4656 120-126 -0.303 97.0 -0.303 97.0 noncon
hsa-miR-6805-5p 203-209 -0.301 90.0 -0.301 92.0 noncon
hsa-miR-4509 488-495 -0.298 98.0 -0.298 98.0 noncon
hsa-miR-8089 124-130 -0.296 96.0 -0.296 97.0 noncon
hsa-miR-135b-3p 701-707 -0.294 91.0 -0.294 93.0 noncon
hsa-miR-4999-5p 655-661 -0.293 94.0 -0.293 96.0 noncon
hsa-miR-6716-5p 34-40 -0.292 95.0 -0.292 96.0 noncon
hsa-miR-4667-5p 124-130 -0.288 95.0 -0.288 96.0 noncon
hsa-miR-148b-3p 526-533 -0.287 93.0 -0.287 95.0 noncon
hsa-miR-152-3p 526-533 -0.287 93.0 -0.287 95.0 noncon
hsa-miR-148a-3p 526-533 -0.287 93.0 -0.287 95.0 noncon
hsa-miR-183-5p.1 235-241 -0.287 95.0 -0.287 96.0 noncon
hsa-miR-4489 122-128 -0.269 95.0 -0.269 96.0 noncon
hsa-miR-1972 300-306 -0.267 96.0 -0.267 97.0 noncon
hsa-miR-3972 264-270 -0.264 94.0 -0.264 96.0 noncon
hsa-miR-6865-5p 453-459 -0.256 93.0 -0.256 95.0 noncon
hsa-miR-6815-5p 453-459 -0.256 93.0 -0.256 95.0 noncon
hsa-miR-4700-5p 124-130 -0.251 94.0 -0.251 95.0 noncon