Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
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• The nonreducing terminal GalNAc(β1-4)GlcNAc (LacdiNAc or LDN) group is found as part of N- and O-linked glycans of both vertebrate and invertebrate glycoproteins (PMID: 25003135). This structure is synthesized by two enzymes B4GALNT3 and B4GALNT4.
• LacdiNAc structures are less abundant compared to Type-II lactosamine chains and they have been reported on a limited number of proteins including pituitary prolactin, lutropin (LH), follitropin (FSH), glycodelin and Tissue Factor Pathway Inhibitors (TFPI). They are also formed in epithelial cells of kidney and breast origin.
• Enzyme activity may be peptide core specific suggesting biological importance of such modifications. Due to this peptide specificity the distribution of this substructure may also be limited.
• The β1,4-linked GalNAc can be further modified with a variety of moieties: 4-linked SO4, α2,6-Neu5Ac, or at the subterminal by α1,3-fuc. This results in additional epitopes like 4SGalNAc(β1-4)GlcNAcβ, Siaα(2-6)GalNAc(β1-4)GlcNAcβ, GalNAc(β1-4)[Fuc(α1-3)]GlcNAcβ etc.
• β4GalNAc-T3 and β4GalNAc-T4 transcripts are widely expressed. β4GalNAc-T3 transcript is most abundant in the stomach, colon, and testis. β4GalNAc-T4 transcript is abundant in the ovary, brain, colon, uterus, fetal brain, kidney, and lung.
• Wisteria floribunda agglutinin binds β-linked GalNAc, and is used to monitor B4GalNT3,4 activity in tissue sections.
• β4GalNAc-T3 is upregulated in 75 % of primary colon cancers, correlating with a more malignant phenotype. Enzyme activity related to LacdiNAc is also dysregulated during other cancers: ovarian, pancreatic, prostate and breast.
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miRNA Name | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
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hsa-miR-877-3p | 1036-1043 | -0.468 | 98.0 | -0.468 | 99.0 | noncon | |
hsa-miR-7108-3p | 1091-1098 | -0.407 | 95.0 | -0.407 | 96.0 | noncon | |
hsa-miR-7847-3p | 1925-1932 | -0.381 | 97.0 | -0.381 | 98.0 | noncon | |
hsa-miR-6887-3p | 2015-2022 | -0.366 | 95.0 | -0.366 | 96.0 | noncon | |
hsa-miR-877-3p | 863-869 | -0.343 | 97.0 | -0.343 | 97.0 | noncon | |
hsa-miR-4999-5p | 2031-2038 | -0.325 | 95.0 | -0.325 | 97.0 | noncon | |
hsa-miR-6801-3p | 797-804 | -0.306 | 94.0 | -0.306 | 96.0 | noncon | |
hsa-miR-4665-5p | 339-346 | -0.298 | 93.0 | -0.298 | 95.0 | noncon | |
hsa-miR-6826-3p | 2016-2023 | -0.298 | 94.0 | -0.298 | 95.0 | noncon | |
hsa-miR-541-3p | 1829-1835 | -0.296 | 95.0 | -0.296 | 96.0 | noncon | |
hsa-miR-4758-3p | 1722-1729 | -0.293 | 95.0 | -0.293 | 96.0 | noncon | |
hsa-miR-365a-3p | 639-646 | -0.289 | 95.0 | -0.289 | 96.0 | con | |
hsa-miR-365b-3p | 639-646 | -0.289 | 95.0 | -0.289 | 96.0 | con | |
hsa-miR-296-5p | 16-23 | -0.288 | 90.0 | -0.288 | 92.0 | noncon | |
hsa-miR-3612 | 1318-1325 | -0.285 | 96.0 | -0.285 | 97.0 | noncon | |
hsa-miR-1306-5p | 1111-1118 | -0.279 | 95.0 | -0.279 | 97.0 | noncon | |
hsa-miR-650 | 1318-1325 | -0.277 | 96.0 | -0.277 | 97.0 | noncon | |
hsa-miR-4258 | 1092-1098 | -0.275 | 91.0 | -0.275 | 93.0 | noncon | |
hsa-miR-3943 | 919-925 | -0.266 | 93.0 | -0.266 | 95.0 | noncon | |
hsa-miR-323a-5p | 368-375 | -0.265 | 94.0 | -0.265 | 95.0 | noncon | |
hsa-miR-6810-3p | 797-804 | -0.264 | 92.0 | -0.264 | 94.0 | noncon | |
hsa-miR-654-5p | 1829-1835 | -0.263 | 93.0 | -0.263 | 95.0 | noncon | |
hsa-miR-1306-5p | 1390-1397 | -0.262 | 94.0 | -0.262 | 96.0 | noncon | |
hsa-miR-1260a | 2011-2017 | -0.25 | 92.0 | -0.25 | 94.0 | noncon | |
hsa-miR-1260b | 2011-2017 | -0.25 | 92.0 | -0.25 | 94.0 | noncon |