Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Glycogene class |
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Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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+ | Ser | → |
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+ | UDP |
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+ | Ser | → |
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+ | UDP |
• POGLUT1 is an ER resident, soluble, protein with O-Glucosyltransferase activity. It adds β-linked Glc to hydroxyl gp. of Ser specifically in EGF repeats.
• Rumi is the gene encoding for POGLUT1 activity. Rumi is essential for Notch signaling, and Rumi dysregulation is linked to several human diseases.
• The consensus sequence for this enzyme activity in EGF is C1-X-S-X-P/A-C2, where C1 and C2 are the first and second conserved Cys of the EGF repeat. Such a motif is predicted to occur in 40 proteins in mammals are 40 mammalian proteins.
• While initially identified in Factor VII and IX, it is heavily glycosylated on Notch. This is thus a penetrating gene that is E9.5 lethal in mice.
• O-glucose is typically extended by two α3-linked xyloses to the trisaccharide, Xyl(α1-3)Xyl(α1-3)Glcβ1-O-Ser in mammals, although mono- and di-saccharide forms have also been seen. Here, glucoside xylosyltransferases 1 and 2 (GXYLT1 and GXYLT2) adds the first α3-linked xylose to O-glucose on EGF repeats, and xyloside xylosytransferase 1 (XXTLT1) adds the second xylose to Xyl-Glc disaccharides on EGF repeats.
• POGLUT1 is overexpressed in some human myelodysplastic syndrome patients.
• POGLUT1 may also transfer Xyl directly to the EGF domain if the consensus sequence is C1-X-S-S-P/A-C2. Thus, it also exhibits POXYLT activity.
ER | Cis- | Medial- | Trans- | TGN |
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