Description: The GlycoEnzDB is a manually curated glycoEnzyme database, primarily focused on humans. It covers 390 enzymes across 28 pathway maps. Facilities are also available to create custom glycosylation reaction pathways using experimental data in SBML format and for pathway simulation
Contacts: Sriram Neelamegham (neel@buffalo.edu), Yusen Zhou (yusenzho@buffalo.edu) or Ted Groth (tgroth@buffalo.edu).
Glycogene class |
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Pathway figs |
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Glycosylation |
Sugar Nucleotide |
Glucuronidation |
Glycan Degradation |
Pathway Map |
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• ST8SIA2 is characterized by the ability to synthesize polysialic acid (polySia) structures and can therefore be sub-classified as a polysialyltransferase. Sia polymers can have upto 400 Sia units.
• ST8SIA2 transfers Sia residue from CMP-Sia to Siaα2,3Gal- and Siaα2,6Gal/GalNAc on N-linked and/or O-linked glycans.
• Its function is similar to another polySia enzyme ST8Sia-4, though both proteins are expressed in different spatiotemporal patterns.
• Restricted activity has been shown mostly to brain proteins especially NCAM and SynCAM-1 in the IgG domain, though it can also act on other proteins with lower activity. Thus, there is a protein dependence for enzyme activity.
• PolySia imparts an anti-adhesive effect due to the bulky, polyanionic structure.
• It is implicated in psychiatric disorders and cancer.
• Endo-N-acylneuraminidase (Endo-N) specifically cleaves α2,8-linked polySia.
• ST8Sia-2 plus -4 DKO mice show severe phenotypes, such as postnatal growth retardation, precocious death, a high incidence of hydrocephalus, and agenesis or hypoplasia of major brain fiber tracts.
• While poly-Sia is not common to normal tissue, a number of cancers express polySia including neuroblastomas, Wilms tumors, medulloblastomas, pheochromocytomas, medullary thyroid carcinomas, non-small-cell lung carcinomas (NSCL), pituitary adenomas and breast cancer.
ER | Cis- | Medial- | Trans- | TGN |
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miRNA Name | Pos. | Context Score | Frac. | Wt. Context | Frac. | Conserved | Quality |
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hsa-miR-596 | 92-99 | -0.408 | 99.0 | -0.408 | 99.0 | noncon | |
hsa-miR-5090 | 2010-2017 | -0.402 | 95.0 | -0.402 | 96.0 | noncon | |
hsa-miR-483-3p.1 | 742-749 | -0.395 | 98.0 | -0.395 | 99.0 | noncon | |
hsa-miR-6775-5p | 2010-2017 | -0.389 | 94.0 | -0.389 | 95.0 | noncon | |
hsa-miR-541-5p | 4335-4342 | -0.376 | 99.0 | -0.204 | 96.0 | noncon | |
hsa-miR-342-5p | 2153-2160 | -0.369 | 97.0 | -0.369 | 97.0 | noncon | |
hsa-miR-6852-5p | 2329-2336 | -0.356 | 98.0 | -0.356 | 98.0 | noncon | |
hsa-miR-510-5p | 170-177 | -0.347 | 98.0 | -0.347 | 98.0 | noncon | |
hsa-miR-4664-5p | 2153-2160 | -0.327 | 96.0 | -0.327 | 96.0 | noncon | |
hsa-miR-1227-5p | 3913-3919 | -0.31 | 96.0 | -0.31 | 97.0 | noncon | |
hsa-miR-503-3p | 1388-1395 | -0.306 | 95.0 | -0.306 | 97.0 | noncon | |
hsa-miR-4446-3p | 1861-1868 | -0.304 | 96.0 | -0.304 | 97.0 | noncon | |
hsa-miR-4473 | 3706-3713 | -0.301 | 91.0 | -0.301 | 94.0 | noncon | |
hsa-miR-4655-3p | 942-949 | -0.301 | 92.0 | -0.301 | 94.0 | noncon | |
hsa-miR-6721-5p | 2475-2482 | -0.3 | 94.0 | -0.3 | 95.0 | noncon | |
hsa-miR-5001-5p | 1753-1760 | -0.298 | 92.0 | -0.298 | 94.0 | noncon | |
hsa-miR-4498 | 1753-1760 | -0.288 | 92.0 | -0.288 | 93.0 | noncon | |
hsa-miR-17-5p | 4137-4144 | -0.285 | 97.0 | -0.285 | 98.0 | con | |
hsa-miR-93-5p | 4137-4144 | -0.285 | 98.0 | -0.285 | 98.0 | con | |
hsa-miR-20b-5p | 4137-4144 | -0.285 | 97.0 | -0.285 | 98.0 | con | |
hsa-miR-124-3p.1 | 3998-4004 | -0.283 | 94.0 | -0.283 | 96.0 | con | |
hsa-miR-106a-5p | 4137-4144 | -0.282 | 97.0 | -0.282 | 98.0 | con | |
hsa-miR-4292 | 1431-1438 | -0.276 | 95.0 | -0.276 | 96.0 | noncon | |
hsa-miR-1247-3p | 2611-2618 | -0.275 | 91.0 | -0.275 | 93.0 | noncon | |
hsa-miR-519d-3p | 4137-4144 | -0.269 | 97.0 | -0.269 | 98.0 | con | |
hsa-miR-6791-5p | 1431-1438 | -0.268 | 94.0 | -0.268 | 96.0 | noncon | |
hsa-miR-5580-5p | 1498-1504 | -0.268 | 92.0 | -0.268 | 94.0 | noncon | |
hsa-miR-6782-5p | 3263-3269 | -0.267 | 90.0 | -0.267 | 92.0 | noncon | |
hsa-miR-1587 | 1754-1761 | -0.266 | 94.0 | -0.266 | 95.0 | noncon | |
hsa-miR-106b-5p | 4137-4144 | -0.264 | 97.0 | -0.264 | 98.0 | con | |
hsa-miR-6744-5p | 1017-1023 | -0.264 | 94.0 | -0.264 | 96.0 | noncon | |
hsa-miR-20a-5p | 4137-4144 | -0.264 | 97.0 | -0.264 | 98.0 | con | |
hsa-miR-605-3p | 3404-3411 | -0.264 | 93.0 | -0.264 | 95.0 | noncon | |
hsa-miR-4474-3p | 977-984 | -0.261 | 93.0 | -0.261 | 95.0 | noncon | |
hsa-miR-6864-5p | 4046-4053 | -0.26 | 95.0 | -0.26 | 96.0 | noncon | |
hsa-miR-7515 | 4045-4052 | -0.26 | 95.0 | -0.26 | 96.0 | noncon | |
hsa-miR-1227-3p | 71-78 | -0.259 | 91.0 | -0.259 | 95.0 | noncon | |
hsa-miR-3675-5p | 3914-3920 | -0.251 | 91.0 | -0.251 | 94.0 | noncon | |
hsa-miR-5587-5p | 128-134 | -0.251 | 94.0 | -0.251 | 95.0 | noncon | |
hsa-miR-4283 | 1064-1071 | -0.25 | 90.0 | -0.25 | 92.0 | noncon |