This app allows users to browse sgRNA and associated data collected using the Glycogene CRISPR sgRNA library. To use:
Information about sgRNA targeting the selected genes,
location on transcript and experimental data regarding sgRNA enrichment/depletion will appear in table format.
To determine glycogene transcripts appearing in selected, common cancer cell lines:
Data shown is rendered as heat maps using RSEM (RNA-seq by Expectation Maximization) collected from the Cancer Cell Line Encyclopedia (CCLE) (ref 3).
An RSEM value of 1 corresponds to the top 20% of RSEM values in the CCLE for the selected NCI60 cell lines. Thus, RSEM values > 1
are considered to be highly expressed.