Gene Details: GNPDA2
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General Information
Gene Name: GNPDA2 (Glucosamine-6-phosphate isomerase 2)
Synonym: GNP2
Short Names:
Alternative Names: Glucosamine-6-phosphate deaminase 2;Glucosamine-6-phosphate isomerase SB52;
Notes:
- Catalyzes the reversible conversion of alpha-D-glucosamine 6-phosphate (GlcN-6P) into beta-D-fructose 6-phosphate (Fru-6P) during the synthesis of UDP-GlcNAc.
Description from Dr.Glyco-GPT:
Write a 100-350 word essay about the enzyme human GNPDA2. Provide information related to enzyme: i) function, ii) reaction pathways, ii) Location, and iv) diseases. In writing include these four subheadings ### Function Human GNPDA2, or glucosamine-6-phosphate deaminase 2, is an enzyme involved in amino sugar metabolism. GNPDA2 catalyzes the deamination of glucosamine-6-phosphate (GlcN-6-P) to produce fructose-6-phosphate (Fru-6-P) and ammonia. This reaction is essential for regulating the balance between the hexosamine biosynthesis pathway and glycolysis, linking nutrient sensing and energy production with amino sugar metabolism. ### Reaction Pathways GNPDA2 plays a role in the hexosamine biosynthesis pathway and glycolysis. By converting GlcN-6-P into Fru-6-P, GNPDA2 helps to manage the flow of intermediates between these metabolic pathways. The product, Fru-6-P, is a critical intermediate in glycolysis, contributing to the production of energy in the form of ATP. Additionally, GNPDA2’s activity helps maintain levels of GlcN-6-P, which is a precursor for the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), a molecule necessary for glycosylation processes. Through these pathways, GNPDA2 influences cellular metabolism, energy balance, and the synthesis of essential glycoconjugates. ### Location GNPDA2 is primarily localized in the cytoplasm, where it functions as part of the cellular metabolic machinery. The enzyme’s cytoplasmic location allows it to readily interact with GlcN-6-P, facilitating its conversion to Fru-6-P, and integrating amino sugar metabolism with glycolysis. This strategic localization supports GNPDA2’s role in ensuring that metabolic intermediates are appropriately balanced for energy production and biosynthetic processes. ### Diseases GNPDA2 has been implicated in metabolic disorders, particularly in the context of obesity and type 2 diabetes. Genetic studies have identified variants of the GNPDA2 gene associated with an increased risk of obesity, suggesting that alterations in the enzyme’s activity may affect energy metabolism and fat storage. The link between GNPDA2 and obesity highlights the enzyme’s potential role in regulating body weight and glucose metabolism. Additionally, given its involvement in the hexosamine biosynthesis pathway, GNPDA2 may also influence insulin resistance, a key factor in the development of type 2 diabetes. Understanding GNPDA2’s function and regulation could provide insights into the metabolic dysregulation underlying these common diseases.
Catalytic Activity

Reaction and Disease Links
EC # (IUBMB):
3.5.99.6
Brenda:
3.5.99.6
OMIM:
613222
KEGG: 132789
Rhea:
12172
Reactome :
R-HSA-70171
Transcript levels (Cell lines and Single cell data) URL
CRISPR-knockout

CRISPR-activation

CRISPR-inactivation

Top 10 TFs
TF | Score |
---|---|
UBE2I | 0.456543 |
TCF25 | 0.448114 |
XRCC5 | 0.444387 |
YY1 | 0.435265 |
HNRNPK | 0.433236 |
SON | 0.431722 |
SSU72 | 0.429994 |
PCBP2 | 0.426021 |
SNRNP70 | 0.425185 |
PCBP1 | 0.424105 |
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